Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SLC6A4P31645 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.25■□□□□ 0.19
SLC6A4P31645 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.25■□□□□ 0.19
SLC6A4P31645 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SLC6A4P31645 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
SLC6A4P31645 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.25■□□□□ 0.19
SLC6A4P31645 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.25■□□□□ 0.19
SLC6A4P31645 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.25■□□□□ 0.19
SLC6A4P31645 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.25■□□□□ 0.19
SLC6A4P31645 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.25■□□□□ 0.19
SLC6A4P31645 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.25■□□□□ 0.19
SLC6A4P31645 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.25■□□□□ 0.19
SLC6A4P31645 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.25■□□□□ 0.19
SLC6A4P31645 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.25■□□□□ 0.19
SLC6A4P31645 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.25■□□□□ 0.19
SLC6A4P31645 AC027307.3-201ENST00000594262 1100 ntBASIC16.25■□□□□ 0.19
SLC6A4P31645 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.25■□□□□ 0.19
SLC6A4P31645 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SLC6A4P31645 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SLC6A4P31645 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.25■□□□□ 0.19
SLC6A4P31645 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.24■□□□□ 0.19
SLC6A4P31645 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 TNRC18P3-201ENST00000441896 2691 ntBASIC16.24■□□□□ 0.19
SLC6A4P31645 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SLC6A4P31645 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.24■□□□□ 0.19
SLC6A4P31645 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
SLC6A4P31645 MYCLP2-201ENST00000449268 967 ntBASIC16.24■□□□□ 0.19
SLC6A4P31645 ELK1P1-201ENST00000485699 580 ntBASIC16.24■□□□□ 0.19
SLC6A4P31645 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
SLC6A4P31645 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.24■□□□□ 0.19
SLC6A4P31645 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 CTBP2P3-201ENST00000585629 1255 ntBASIC16.24■□□□□ 0.19
SLC6A4P31645 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.24■□□□□ 0.19
SLC6A4P31645 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 AC093726.1-201ENST00000608064 963 ntBASIC16.24■□□□□ 0.19
SLC6A4P31645 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SLC6A4P31645 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SLC6A4P31645 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
SLC6A4P31645 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 RN7SL399P-201ENST00000471648 279 ntBASIC16.23■□□□□ 0.19
SLC6A4P31645 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 RRP7BP-205ENST00000566851 833 ntBASIC16.23■□□□□ 0.19
SLC6A4P31645 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
SLC6A4P31645 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SLC6A4P31645 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.23■□□□□ 0.19
SLC6A4P31645 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.23■□□□□ 0.19
SLC6A4P31645 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms