Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 NDUFAB1P1-201ENST00000404262 460 ntBASIC18.65■□□□□ 0.58
COL4A5P29400 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A5P29400 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A5P29400 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A5P29400 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A5P29400 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.65■□□□□ 0.58
COL4A5P29400 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A5P29400 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A5P29400 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A5P29400 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A5P29400 LRRC59-203ENST00000576448 1531 ntBASIC18.65■□□□□ 0.58
COL4A5P29400 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL4A5P29400 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.64■□□□□ 0.58
COL4A5P29400 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.64■□□□□ 0.58
COL4A5P29400 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC18.64■□□□□ 0.57
COL4A5P29400 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A5P29400 AC004466.1-201ENST00000599515 1080 ntBASIC18.64■□□□□ 0.57
COL4A5P29400 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.64■□□□□ 0.57
COL4A5P29400 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL4A5P29400 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL4A5P29400 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 DPM3-202ENST00000368399 517 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 AL133466.1-201ENST00000447582 150 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 AC008267.1-201ENST00000474858 1069 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 SUPT4H1P2-201ENST00000501248 353 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 AC103988.2-201ENST00000561804 725 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.63■□□□□ 0.57
COL4A5P29400 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A5P29400 MIR7845-201ENST00000618396 99 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A5P29400 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
COL4A5P29400 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.63■□□□□ 0.57
COL4A5P29400 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 MIR648-201ENST00000385046 94 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A5P29400 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A5P29400 ATP6V0CP2-201ENST00000469409 207 ntBASIC18.63■□□□□ 0.57
COL4A5P29400 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL4A5P29400 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC18.63■□□□□ 0.57
COL4A5P29400 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
COL4A5P29400 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.63■□□□□ 0.57
COL4A5P29400 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 AC012313.1-201ENST00000593393 3059 ntBASIC18.62■□□□□ 0.57
COL4A5P29400 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A5P29400 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.62■□□□□ 0.57
COL4A5P29400 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A5P29400 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL4A5P29400 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC18.62■□□□□ 0.57
COL4A5P29400 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL4A5P29400 AC116345.2-201ENST00000512837 523 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms