Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC02199-201ENST00000506655 2702 ntBASIC13.53□□□□□ -0.24
USF1P22415 AGK-211ENST00000629555 2765 ntTSL 5 BASIC13.53□□□□□ -0.24
USF1P22415 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USF1P22415 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.53□□□□□ -0.24
USF1P22415 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
USF1P22415 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USF1P22415 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.53□□□□□ -0.24
USF1P22415 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
USF1P22415 HYMAI-201ENST00000635591 3347 ntBASIC13.52□□□□□ -0.24
USF1P22415 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USF1P22415 AC006449.5-201ENST00000610658 2098 ntBASIC13.52□□□□□ -0.24
USF1P22415 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
USF1P22415 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USF1P22415 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
USF1P22415 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
USF1P22415 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USF1P22415 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
USF1P22415 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
USF1P22415 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
USF1P22415 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
USF1P22415 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
USF1P22415 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.52□□□□□ -0.25
USF1P22415 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.52□□□□□ -0.25
USF1P22415 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC13.52□□□□□ -0.25
USF1P22415 AL139010.1-201ENST00000454878 894 ntBASIC13.52□□□□□ -0.25
USF1P22415 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
USF1P22415 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC13.52□□□□□ -0.25
USF1P22415 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC13.52□□□□□ -0.25
USF1P22415 AC061975.2-201ENST00000581722 295 ntBASIC13.52□□□□□ -0.25
USF1P22415 AC007431.3-201ENST00000623221 587 ntBASIC13.52□□□□□ -0.25
USF1P22415 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.52□□□□□ -0.25
USF1P22415 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.52□□□□□ -0.25
USF1P22415 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC13.52□□□□□ -0.25
USF1P22415 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 AL512652.2-201ENST00000625156 1716 ntBASIC13.52□□□□□ -0.25
USF1P22415 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.52□□□□□ -0.25
USF1P22415 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.52□□□□□ -0.25
USF1P22415 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.52□□□□□ -0.25
USF1P22415 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
USF1P22415 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC13.52□□□□□ -0.25
USF1P22415 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.52□□□□□ -0.25
USF1P22415 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC13.52□□□□□ -0.25
USF1P22415 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
USF1P22415 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
USF1P22415 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
USF1P22415 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.51□□□□□ -0.25
USF1P22415 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 GPAA1P2-202ENST00000606848 1787 ntBASIC13.51□□□□□ -0.25
USF1P22415 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
USF1P22415 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC13.51□□□□□ -0.25
USF1P22415 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC13.51□□□□□ -0.25
USF1P22415 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 SLC7A15P-201ENST00000424028 1363 ntBASIC13.51□□□□□ -0.25
USF1P22415 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
USF1P22415 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
USF1P22415 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
USF1P22415 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 SPDYE17-201ENST00000412399 783 ntBASIC13.51□□□□□ -0.25
USF1P22415 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
USF1P22415 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
USF1P22415 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.51□□□□□ -0.25
USF1P22415 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms