Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.3■□□□□ 0.04
SEMA3DO95025 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
SEMA3DO95025 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.29■□□□□ 0.04
SEMA3DO95025 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.29■□□□□ 0.04
SEMA3DO95025 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.29■□□□□ 0.04
SEMA3DO95025 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.29■□□□□ 0.04
SEMA3DO95025 AL136982.4-201ENST00000437689 1740 ntBASIC15.29■□□□□ 0.04
SEMA3DO95025 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.29■□□□□ 0.04
SEMA3DO95025 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 AC254562.1-201ENST00000417586 456 ntBASIC15.29■□□□□ 0.04
SEMA3DO95025 FAM58DP-201ENST00000428076 619 ntBASIC15.29■□□□□ 0.04
SEMA3DO95025 AP006288.1-201ENST00000446065 395 ntBASIC15.29■□□□□ 0.04
SEMA3DO95025 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.29■□□□□ 0.04
SEMA3DO95025 AC092865.5-201ENST00000545435 363 ntBASIC15.29■□□□□ 0.04
SEMA3DO95025 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
SEMA3DO95025 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.29■□□□□ 0.04
SEMA3DO95025 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
SEMA3DO95025 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.29■□□□□ 0.04
SEMA3DO95025 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.29■□□□□ 0.04
SEMA3DO95025 NORAD-201ENST00000565493 5339 ntBASIC15.29■□□□□ 0.04
SEMA3DO95025 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.29■□□□□ 0.04
SEMA3DO95025 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.29■□□□□ 0.04
SEMA3DO95025 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
SEMA3DO95025 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.29■□□□□ 0.04
SEMA3DO95025 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
SEMA3DO95025 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
SEMA3DO95025 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SEMA3DO95025 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SEMA3DO95025 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.28■□□□□ 0.04
SEMA3DO95025 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 GPS2P2-201ENST00000430745 888 ntBASIC15.28■□□□□ 0.04
SEMA3DO95025 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
SEMA3DO95025 AC023141.5-201ENST00000458585 616 ntBASIC15.28■□□□□ 0.04
SEMA3DO95025 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.28■□□□□ 0.04
SEMA3DO95025 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.28■□□□□ 0.04
SEMA3DO95025 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.28■□□□□ 0.04
SEMA3DO95025 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.28■□□□□ 0.04
SEMA3DO95025 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.28■□□□□ 0.04
SEMA3DO95025 AC018529.1-201ENST00000613063 361 ntBASIC15.28■□□□□ 0.04
SEMA3DO95025 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.28■□□□□ 0.04
SEMA3DO95025 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
SEMA3DO95025 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.28■□□□□ 0.04
SEMA3DO95025 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
SEMA3DO95025 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC15.27■□□□□ 0.04
SEMA3DO95025 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.04
SEMA3DO95025 REXO1L1P-202ENST00000608646 1974 ntBASIC15.27■□□□□ 0.04
SEMA3DO95025 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
SEMA3DO95025 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.27■□□□□ 0.04
SEMA3DO95025 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC15.27■□□□□ 0.04
SEMA3DO95025 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.27■□□□□ 0.04
SEMA3DO95025 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms