Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HOXC11O43248 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 PCDHA1-201ENST00000378133 2726 ntBASIC16.12■□□□□ 0.17
HOXC11O43248 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.12■□□□□ 0.17
HOXC11O43248 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HOXC11O43248 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.12■□□□□ 0.17
HOXC11O43248 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.12■□□□□ 0.17
HOXC11O43248 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.12■□□□□ 0.17
HOXC11O43248 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC11O43248 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.11■□□□□ 0.17
HOXC11O43248 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HOXC11O43248 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.11■□□□□ 0.17
HOXC11O43248 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.11■□□□□ 0.17
HOXC11O43248 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 VDAC1P7-201ENST00000462417 847 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC11O43248 AC119751.2-201ENST00000504529 210 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC11O43248 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC11O43248 SLC25A47P1-201ENST00000531577 414 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC11O43248 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 AP005482.1-201ENST00000563722 1273 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HOXC11O43248 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HOXC11O43248 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.11■□□□□ 0.17
HOXC11O43248 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.11■□□□□ 0.17
HOXC11O43248 AC018892.3-201ENST00000623986 2499 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 AC018665.1-201ENST00000622927 1362 ntBASIC16.11■□□□□ 0.17
HOXC11O43248 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.11■□□□□ 0.17
HOXC11O43248 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HOXC11O43248 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HOXC11O43248 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 C1QBPP1-201ENST00000400117 770 ntBASIC16.1■□□□□ 0.17
HOXC11O43248 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.1■□□□□ 0.17
HOXC11O43248 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.1■□□□□ 0.17
HOXC11O43248 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.1■□□□□ 0.17
HOXC11O43248 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.1■□□□□ 0.17
HOXC11O43248 CROCCP4-201ENST00000457096 498 ntBASIC16.1■□□□□ 0.17
HOXC11O43248 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HOXC11O43248 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.1■□□□□ 0.17
HOXC11O43248 NAA38-206ENST00000576384 424 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HOXC11O43248 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HOXC11O43248 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.1■□□□□ 0.17
HOXC11O43248 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms