Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 MNT-208ENST00000575394 606 ntTSL 4 BASIC22.3■■□□□ 1.16
MSH5O43196 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 AC007038.2-201ENST00000608095 740 ntBASIC22.3■■□□□ 1.16
MSH5O43196 LINC02098-202ENST00000609260 554 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH5O43196 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH5O43196 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH5O43196 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 FUT8-AS1-201ENST00000621019 1521 ntBASIC22.3■■□□□ 1.16
MSH5O43196 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
MSH5O43196 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC22.3■■□□□ 1.16
MSH5O43196 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH5O43196 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH5O43196 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
MSH5O43196 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 AL590084.2-201ENST00000401481 382 ntBASIC22.29■■□□□ 1.16
MSH5O43196 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC22.29■■□□□ 1.16
MSH5O43196 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 TIMM8BP1-201ENST00000452384 211 ntBASIC22.29■■□□□ 1.16
MSH5O43196 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC22.29■■□□□ 1.16
MSH5O43196 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC22.29■■□□□ 1.16
MSH5O43196 POLD4-211ENST00000539074 714 ntTSL 3 BASIC22.29■■□□□ 1.16
MSH5O43196 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 AC073857.1-201ENST00000625082 1054 ntBASIC22.29■■□□□ 1.16
MSH5O43196 AC099654.10-201ENST00000640395 161 ntBASIC22.29■■□□□ 1.16
MSH5O43196 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC22.29■■□□□ 1.16
MSH5O43196 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH5O43196 AL049757.1-201ENST00000616842 1596 ntBASIC22.29■■□□□ 1.16
MSH5O43196 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH5O43196 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH5O43196 AC097637.2-201ENST00000624096 1997 ntBASIC22.29■■□□□ 1.16
MSH5O43196 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
MSH5O43196 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
MSH5O43196 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH5O43196 AC144831.1-201ENST00000573312 2656 ntBASIC22.28■■□□□ 1.16
MSH5O43196 INTS4-211ENST00000535943 1382 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH5O43196 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 AC120338.1-201ENST00000625074 1541 ntBASIC22.28■■□□□ 1.16
MSH5O43196 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC22.28■■□□□ 1.16
MSH5O43196 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH5O43196 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH5O43196 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH5O43196 RRM2P4-201ENST00000441721 562 ntBASIC22.28■■□□□ 1.16
MSH5O43196 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC22.28■■□□□ 1.16
MSH5O43196 LINC01548-201ENST00000451980 696 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH5O43196 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH5O43196 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
MSH5O43196 TERF1P3-201ENST00000505638 1227 ntBASIC22.28■■□□□ 1.16
MSH5O43196 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH5O43196 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
MSH5O43196 AC090888.1-201ENST00000561335 1141 ntBASIC22.28■■□□□ 1.16
MSH5O43196 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC22.28■■□□□ 1.16
MSH5O43196 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH5O43196 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH5O43196 AL391834.1-201ENST00000609609 560 ntBASIC22.28■■□□□ 1.16
MSH5O43196 ZRANB2-207ENST00000611683 1257 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
MSH5O43196 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH5O43196 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH5O43196 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH5O43196 AL008638.4-201ENST00000624792 1315 ntBASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms