Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC20.01■□□□□ 0.79
NPHP1O15259 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
NPHP1O15259 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC20.01■□□□□ 0.79
NPHP1O15259 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC20.01■□□□□ 0.79
NPHP1O15259 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
NPHP1O15259 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
NPHP1O15259 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 AC093525.8-201ENST00000624099 1342 ntBASIC20.01■□□□□ 0.79
NPHP1O15259 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
NPHP1O15259 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
NPHP1O15259 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20■□□□□ 0.79
NPHP1O15259 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 KRT8P44-201ENST00000441609 1350 ntBASIC20■□□□□ 0.79
NPHP1O15259 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
NPHP1O15259 AC134915.1-201ENST00000426461 574 ntBASIC20■□□□□ 0.79
NPHP1O15259 AL355994.2-201ENST00000447882 704 ntBASIC20■□□□□ 0.79
NPHP1O15259 AL583810.1-201ENST00000553344 1045 ntBASIC20■□□□□ 0.79
NPHP1O15259 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 RPSAP52-203ENST00000622976 1023 ntBASIC20■□□□□ 0.79
NPHP1O15259 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
NPHP1O15259 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 UBALD1-205ENST00000590891 2641 ntBASIC20■□□□□ 0.79
NPHP1O15259 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC20■□□□□ 0.79
NPHP1O15259 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20■□□□□ 0.79
NPHP1O15259 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20■□□□□ 0.79
NPHP1O15259 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP1O15259 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP1O15259 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
NPHP1O15259 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP1O15259 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
NPHP1O15259 AD000864.1-201ENST00000624076 2295 ntBASIC19.99■□□□□ 0.79
NPHP1O15259 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP1O15259 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.99■□□□□ 0.79
NPHP1O15259 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP1O15259 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.99■□□□□ 0.79
NPHP1O15259 RPL13AP25-201ENST00000484130 612 ntBASIC19.99■□□□□ 0.79
NPHP1O15259 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.99■□□□□ 0.79
NPHP1O15259 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.99■□□□□ 0.79
NPHP1O15259 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.99■□□□□ 0.79
NPHP1O15259 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC19.99■□□□□ 0.79
NPHP1O15259 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP1O15259 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP1O15259 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
NPHP1O15259 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
NPHP1O15259 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC19.99■□□□□ 0.79
NPHP1O15259 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
NPHP1O15259 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.98■□□□□ 0.79
NPHP1O15259 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms