Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 LPGAT1-202ENST00000366997 7782 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC019294.4-201ENST00000561777 2905 ntBASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC123595.1-201ENST00000440769 1046 ntBASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 KRT18P14-201ENST00000534205 1250 ntBASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 ATXN2-226ENST00000608853 4376 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 DTL-201ENST00000366991 4573 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 SPECC1-205ENST00000395529 4971 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 ANKRD36-201ENST00000420699 6269 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AFDN-207ENST00000400822 7593 ntTSL 5 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 MON2-214ENST00000641654 10382 ntBASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 THSD7A-202ENST00000423059 10663 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 PI4KAP2-211ENST00000486209 3213 ntTSL 5 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC8.8□□□□□ -1
CHKB-CPT1BH3BT56 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 NUTM2HP-201ENST00000442076 2498 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 MIR497HG-202ENST00000572453 3838 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 SSR4P1-203ENST00000599569 2260 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 SPATS2-201ENST00000321898 3158 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 Z85996.1-201ENST00000494644 937 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 RARRES2P10-201ENST00000564312 460 ntBASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 NSD3-202ENST00000317025 10776 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 RASAL2-201ENST00000367649 4378 ntAPPRIS P4 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
CHKB-CPT1BH3BT56 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC8.79□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms