Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 SLED1-202ENST00000512051 380 ntBASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 KRT90P-201ENST00000549264 1064 ntBASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 AL603756.1-201ENST00000606511 2163 ntBASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDHGA1Q9Y5H4 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 ACKR1-201ENST00000368121 1240 ntBASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 AC092506.1-202ENST00000401022 528 ntBASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 C2orf27AP3-201ENST00000434123 579 ntBASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 HLA-DPB2-205ENST00000435074 1188 ntBASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 AL354718.3-201ENST00000616414 581 ntBASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 CR382287.1-201ENST00000623954 586 ntBASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDHGA1Q9Y5H4 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 AC006033.1-201ENST00000440505 426 ntBASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 AC093433.1-201ENST00000458048 571 ntBASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 RPL13AP20-201ENST00000459725 609 ntBASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 VDAC1P7-201ENST00000462417 847 ntBASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 AC023310.1-201ENST00000554836 735 ntBASIC15.23■□□□□ 0.03
PCDHGA1Q9Y5H4 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms