Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 ANKRD19P-201ENST00000338192 862 ntBASIC16.29■□□□□ 0.2
TDP1Q9NUW8 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 AC005229.1-201ENST00000392885 409 ntBASIC16.29■□□□□ 0.2
TDP1Q9NUW8 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 PDIA3P1-201ENST00000471856 1510 ntBASIC16.29■□□□□ 0.2
TDP1Q9NUW8 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.29■□□□□ 0.2
TDP1Q9NUW8 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TDP1Q9NUW8 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 NKILA-202ENST00000614771 2598 ntBASIC16.28■□□□□ 0.2
TDP1Q9NUW8 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 AC068587.3-201ENST00000526613 355 ntBASIC16.28■□□□□ 0.2
TDP1Q9NUW8 AC009486.1-201ENST00000569860 813 ntBASIC16.28■□□□□ 0.2
TDP1Q9NUW8 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
TDP1Q9NUW8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 BCRP2-202ENST00000447763 634 ntBASIC16.27■□□□□ 0.2
TDP1Q9NUW8 KLF2P4-201ENST00000451959 1225 ntBASIC16.27■□□□□ 0.2
TDP1Q9NUW8 CTBP2P5-201ENST00000454986 1264 ntBASIC16.27■□□□□ 0.2
TDP1Q9NUW8 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 BCRP6-201ENST00000510112 632 ntBASIC16.27■□□□□ 0.2
TDP1Q9NUW8 BCRP7-201ENST00000511549 544 ntBASIC16.27■□□□□ 0.2
TDP1Q9NUW8 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.27■□□□□ 0.2
TDP1Q9NUW8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms