Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 AC004945.1-201ENST00000416738 983 ntBASIC19.62■□□□□ 0.73
SYNE4Q8N205 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 PARP8-218ENST00000513738 596 ntTSL 4 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 AC026410.3-201ENST00000514280 936 ntBASIC19.62■□□□□ 0.73
SYNE4Q8N205 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
SYNE4Q8N205 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 AP003680.1-201ENST00000598970 3660 ntBASIC19.62■□□□□ 0.73
SYNE4Q8N205 HCG11-201ENST00000411553 5696 ntBASIC19.62■□□□□ 0.73
SYNE4Q8N205 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.62■□□□□ 0.73
SYNE4Q8N205 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 AC012441.1-201ENST00000446669 685 ntBASIC19.61■□□□□ 0.73
SYNE4Q8N205 KRT18P43-201ENST00000469825 1281 ntBASIC19.61■□□□□ 0.73
SYNE4Q8N205 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 GNRHR2-203ENST00000581100 1187 ntBASIC19.61■□□□□ 0.73
SYNE4Q8N205 MIR3615-201ENST00000581999 87 ntBASIC19.61■□□□□ 0.73
SYNE4Q8N205 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC19.61■□□□□ 0.73
SYNE4Q8N205 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SYNE4Q8N205 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 CYP2AB1P-202ENST00000454440 1456 ntBASIC19.6■□□□□ 0.73
SYNE4Q8N205 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 MIR648-201ENST00000385046 94 ntBASIC19.6■□□□□ 0.73
SYNE4Q8N205 AC026954.1-201ENST00000429771 1293 ntBASIC19.6■□□□□ 0.73
SYNE4Q8N205 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 AP000812.2-201ENST00000538934 718 ntBASIC19.6■□□□□ 0.73
SYNE4Q8N205 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.6■□□□□ 0.73
SYNE4Q8N205 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SYNE4Q8N205 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
SYNE4Q8N205 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms