Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 RPSAP52-203ENST00000622976 1023 ntBASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
UBE3BQ7Z3V4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 AL121723.1-201ENST00000445194 1519 ntBASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 HILS1-202ENST00000545329 423 ntBASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 AC010491.1-201ENST00000563101 2797 ntBASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
UBE3BQ7Z3V4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 AC112504.1-201ENST00000623415 1841 ntBASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 AL603832.2-201ENST00000566195 2125 ntBASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 AL442647.2-201ENST00000429864 857 ntBASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 AL359711.2-201ENST00000563105 872 ntBASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
UBE3BQ7Z3V4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 AC079776.1-201ENST00000401540 1152 ntBASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 ARSEP1-201ENST00000420443 635 ntBASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
UBE3BQ7Z3V4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms