Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 AC093028.1-201ENST00000622998 982 ntBASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.78■□□□□ 0.6
SYNE3Q6ZMZ3 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 KRT8P37-201ENST00000451609 1420 ntBASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 FAM86GP-201ENST00000448322 971 ntBASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 BANF1P1-201ENST00000553684 263 ntBASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC18.77■□□□□ 0.6
SYNE3Q6ZMZ3 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SYNE3Q6ZMZ3 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SYNE3Q6ZMZ3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.77■□□□□ 0.59
SYNE3Q6ZMZ3 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SYNE3Q6ZMZ3 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.77■□□□□ 0.59
SYNE3Q6ZMZ3 PRAL-201ENST00000624952 3286 ntBASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 AL589739.1-201ENST00000607720 493 ntBASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 AC126755.1-201ENST00000525846 6405 ntBASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SYNE3Q6ZMZ3 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 CETN4P-206ENST00000642099 2168 ntBASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 KLF2P3-201ENST00000451977 1087 ntBASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 AC125807.1-201ENST00000483097 614 ntBASIC18.75■□□□□ 0.59
SYNE3Q6ZMZ3 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms