Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ACTBP8-201ENST00000403258 1108 ntBASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 CFL1-214ENST00000534769 758 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 AP003419.4-201ENST00000616071 517 ntBASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC88AQ3V6T2 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 CYP2AB1P-202ENST00000454440 1456 ntBASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CCDC88AQ3V6T2 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AC079178.1-201ENST00000420915 656 ntBASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 FAM197Y7-201ENST00000432892 766 ntBASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 PCDHA12-202ENST00000613593 2588 ntBASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AL138709.1-201ENST00000614840 1693 ntBASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 MIR769-201ENST00000390225 118 ntBASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 SPTLC1P5-201ENST00000450718 252 ntBASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 AC134698.3-201ENST00000523880 214 ntBASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC19.14■□□□□ 0.65
CCDC88AQ3V6T2 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 MIR3907-201ENST00000579424 151 ntBASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 AP000346.4-201ENST00000614827 381 ntBASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 AC006453.4-201ENST00000636949 1252 ntBASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CCDC88AQ3V6T2 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms