Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.15■□□□□ 0.18
RPA3P35244 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 RNU1-129P-201ENST00000384064 167 ntBASIC16.15■□□□□ 0.18
RPA3P35244 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.15■□□□□ 0.18
RPA3P35244 PGAM5P1-201ENST00000518923 814 ntBASIC16.15■□□□□ 0.18
RPA3P35244 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.15■□□□□ 0.18
RPA3P35244 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.15■□□□□ 0.18
RPA3P35244 U1.21-201ENST00000580816 167 ntBASIC16.15■□□□□ 0.18
RPA3P35244 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 AC026748.1-201ENST00000624349 3251 ntBASIC16.15■□□□□ 0.18
RPA3P35244 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 C18orf15-201ENST00000623680 2534 ntBASIC16.15■□□□□ 0.18
RPA3P35244 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
RPA3P35244 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RPA3P35244 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.15■□□□□ 0.18
RPA3P35244 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
RPA3P35244 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.14■□□□□ 0.17
RPA3P35244 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.14■□□□□ 0.17
RPA3P35244 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RPA3P35244 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.14■□□□□ 0.17
RPA3P35244 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.13■□□□□ 0.17
RPA3P35244 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.13■□□□□ 0.17
RPA3P35244 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RPA3P35244 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.13■□□□□ 0.17
RPA3P35244 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.13■□□□□ 0.17
RPA3P35244 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
RPA3P35244 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RPA3P35244 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
RPA3P35244 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 PMS2P4-201ENST00000412466 1052 ntBASIC16.13■□□□□ 0.17
RPA3P35244 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.13■□□□□ 0.17
RPA3P35244 AC140658.5-201ENST00000438532 169 ntBASIC16.13■□□□□ 0.17
RPA3P35244 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 THTPA-204ENST00000554970 569 ntTSL 4 BASIC16.13■□□□□ 0.17
RPA3P35244 THTPA-206ENST00000556015 535 ntTSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.13■□□□□ 0.17
RPA3P35244 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.13■□□□□ 0.17
RPA3P35244 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
RPA3P35244 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms