Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
MSH3P20585 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
MSH3P20585 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
MSH3P20585 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 MIR943-201ENST00000401286 94 ntBASIC15.89■□□□□ 0.13
MSH3P20585 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC15.89■□□□□ 0.13
MSH3P20585 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.89■□□□□ 0.13
MSH3P20585 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 RFPL4AP1-201ENST00000530883 850 ntBASIC15.89■□□□□ 0.13
MSH3P20585 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
MSH3P20585 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.89■□□□□ 0.13
MSH3P20585 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.89■□□□□ 0.13
MSH3P20585 AL133215.2-201ENST00000609242 977 ntBASIC15.89■□□□□ 0.13
MSH3P20585 AC093512.1-201ENST00000617969 520 ntBASIC15.89■□□□□ 0.13
MSH3P20585 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.89■□□□□ 0.13
MSH3P20585 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
MSH3P20585 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
MSH3P20585 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
MSH3P20585 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
MSH3P20585 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.89■□□□□ 0.13
MSH3P20585 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
MSH3P20585 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
MSH3P20585 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 TREML5P-201ENST00000421694 576 ntBASIC15.88■□□□□ 0.13
MSH3P20585 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
MSH3P20585 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 IGHV3-42-201ENST00000520410 361 ntBASIC15.88■□□□□ 0.13
MSH3P20585 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 AL079307.3-201ENST00000556114 283 ntBASIC15.88■□□□□ 0.13
MSH3P20585 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.88■□□□□ 0.13
MSH3P20585 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.88■□□□□ 0.13
MSH3P20585 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.88■□□□□ 0.13
MSH3P20585 AC073592.8-201ENST00000624126 511 ntBASIC15.88■□□□□ 0.13
MSH3P20585 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.88■□□□□ 0.13
MSH3P20585 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.88■□□□□ 0.13
MSH3P20585 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.88■□□□□ 0.13
MSH3P20585 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MSH3P20585 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 BNIP3P1-202ENST00000550043 1585 ntBASIC15.87■□□□□ 0.13
MSH3P20585 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.87■□□□□ 0.13
MSH3P20585 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.87■□□□□ 0.13
MSH3P20585 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.87■□□□□ 0.13
MSH3P20585 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC15.87■□□□□ 0.13
MSH3P20585 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
MSH3P20585 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.87■□□□□ 0.13
MSH3P20585 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
MSH3P20585 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MSH3P20585 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.87■□□□□ 0.13
MSH3P20585 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms