Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 PHKG1P2-201ENST00000457537 863 ntBASIC16.72■□□□□ 0.27
PDGFRAP16234 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.72■□□□□ 0.27
PDGFRAP16234 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.72■□□□□ 0.27
PDGFRAP16234 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 AC005498.2-205ENST00000593218 784 ntBASIC16.72■□□□□ 0.27
PDGFRAP16234 AL450472.2-201ENST00000603663 1156 ntBASIC16.72■□□□□ 0.27
PDGFRAP16234 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
PDGFRAP16234 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.72■□□□□ 0.27
PDGFRAP16234 NFIC-211ENST00000641145 8399 ntBASIC16.72■□□□□ 0.27
PDGFRAP16234 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.72■□□□□ 0.27
PDGFRAP16234 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
PDGFRAP16234 CICP13-201ENST00000422015 2789 ntBASIC16.72■□□□□ 0.27
PDGFRAP16234 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC16.72■□□□□ 0.27
PDGFRAP16234 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.71■□□□□ 0.27
PDGFRAP16234 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
PDGFRAP16234 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFRAP16234 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
PDGFRAP16234 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
PDGFRAP16234 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
PDGFRAP16234 SPDYE17-201ENST00000412399 783 ntBASIC16.71■□□□□ 0.27
PDGFRAP16234 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
PDGFRAP16234 TREML5P-201ENST00000421694 576 ntBASIC16.71■□□□□ 0.27
PDGFRAP16234 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFRAP16234 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFRAP16234 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.71■□□□□ 0.27
PDGFRAP16234 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.71■□□□□ 0.27
PDGFRAP16234 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 AC140878.1-201ENST00000565277 250 ntBASIC16.71■□□□□ 0.27
PDGFRAP16234 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 AL390955.2-201ENST00000603032 514 ntBASIC16.71■□□□□ 0.27
PDGFRAP16234 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.71■□□□□ 0.27
PDGFRAP16234 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
PDGFRAP16234 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFRAP16234 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PDGFRAP16234 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PDGFRAP16234 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFRAP16234 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.7■□□□□ 0.26
PDGFRAP16234 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PDGFRAP16234 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFRAP16234 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PDGFRAP16234 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 FO538757.1-201ENST00000623083 1397 ntBASIC16.7■□□□□ 0.26
PDGFRAP16234 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PDGFRAP16234 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.7■□□□□ 0.26
PDGFRAP16234 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.7■□□□□ 0.26
PDGFRAP16234 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PDGFRAP16234 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFRAP16234 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.7■□□□□ 0.26
PDGFRAP16234 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.7■□□□□ 0.26
PDGFRAP16234 HYMAI-201ENST00000635591 3347 ntBASIC16.7■□□□□ 0.26
PDGFRAP16234 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PDGFRAP16234 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFRAP16234 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PDGFRAP16234 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.7■□□□□ 0.26
PDGFRAP16234 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFRAP16234 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.7■□□□□ 0.26
PDGFRAP16234 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFRAP16234 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
PDGFRAP16234 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFRAP16234 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFRAP16234 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
PDGFRAP16234 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms