Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.11■□□□□ 0.17
VCANP13611 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.11■□□□□ 0.17
VCANP13611 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 HPGD-203ENST00000422112 805 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC16.1■□□□□ 0.17
VCANP13611 TUBB8P8-201ENST00000458717 1058 ntBASIC16.1■□□□□ 0.17
VCANP13611 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.1■□□□□ 0.17
VCANP13611 AC005740.2-201ENST00000511085 419 ntBASIC16.1■□□□□ 0.17
VCANP13611 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC16.1■□□□□ 0.17
VCANP13611 AC006453.1-201ENST00000636037 1257 ntBASIC16.1■□□□□ 0.17
VCANP13611 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.1■□□□□ 0.17
VCANP13611 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC16.1■□□□□ 0.17
VCANP13611 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 AC024293.1-201ENST00000467930 498 ntBASIC16.1■□□□□ 0.17
VCANP13611 AL160314.3-201ENST00000556041 767 ntBASIC16.1■□□□□ 0.17
VCANP13611 DUT-207ENST00000559416 635 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 AC244157.2-201ENST00000616239 1006 ntBASIC16.1■□□□□ 0.17
VCANP13611 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.1■□□□□ 0.17
VCANP13611 KRT8P39-201ENST00000396270 1433 ntBASIC16.1■□□□□ 0.17
VCANP13611 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.1■□□□□ 0.17
VCANP13611 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC16.1■□□□□ 0.17
VCANP13611 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.1■□□□□ 0.17
VCANP13611 ENPP7P8-202ENST00000527856 1345 ntBASIC16.1■□□□□ 0.17
VCANP13611 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VCANP13611 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.1■□□□□ 0.17
VCANP13611 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
VCANP13611 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.09■□□□□ 0.17
VCANP13611 AL132780.4-201ENST00000624870 1135 ntBASIC16.09■□□□□ 0.17
VCANP13611 AC002472.4-201ENST00000641915 272 ntBASIC16.09■□□□□ 0.17
VCANP13611 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VCANP13611 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
VCANP13611 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 AL354877.1-201ENST00000424412 413 ntBASIC16.09■□□□□ 0.17
VCANP13611 PMEL-214ENST00000550447 901 ntTSL 3 BASIC16.09■□□□□ 0.17
VCANP13611 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.09■□□□□ 0.17
VCANP13611 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 AL390961.4-201ENST00000623958 2535 ntBASIC16.09■□□□□ 0.17
VCANP13611 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VCANP13611 EEF1DP4-201ENST00000446006 880 ntBASIC16.09■□□□□ 0.17
VCANP13611 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.09■□□□□ 0.17
VCANP13611 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
VCANP13611 PCDHB18P-201ENST00000524813 2368 ntBASIC16.08■□□□□ 0.17
VCANP13611 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
VCANP13611 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
VCANP13611 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VCANP13611 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VCANP13611 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
VCANP13611 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VCANP13611 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
VCANP13611 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC16.08■□□□□ 0.17
VCANP13611 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC16.08■□□□□ 0.17
VCANP13611 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
VCANP13611 AC015910.1-201ENST00000579400 975 ntBASIC16.08■□□□□ 0.17
VCANP13611 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC16.08■□□□□ 0.17
VCANP13611 AC000095.1-201ENST00000603208 874 ntBASIC16.08■□□□□ 0.17
VCANP13611 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.08■□□□□ 0.16
VCANP13611 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
VCANP13611 AL139384.1-201ENST00000612143 3047 ntBASIC16.08■□□□□ 0.16
VCANP13611 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms