Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 MIR1909-201ENST00000411312 80 ntBASIC18.66■□□□□ 0.58
HLA-DOAP06340 SOCS2P1-201ENST00000417727 557 ntBASIC18.66■□□□□ 0.58
HLA-DOAP06340 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.66■□□□□ 0.58
HLA-DOAP06340 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 EHF-205ENST00000527935 557 ntTSL 2 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 AL512343.1-201ENST00000605837 169 ntBASIC18.66■□□□□ 0.58
HLA-DOAP06340 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HLA-DOAP06340 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.66■□□□□ 0.58
HLA-DOAP06340 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 AL121723.1-201ENST00000445194 1519 ntBASIC18.65■□□□□ 0.58
HLA-DOAP06340 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 MIR658-201ENST00000385210 100 ntBASIC18.65■□□□□ 0.58
HLA-DOAP06340 KRT43P-201ENST00000434019 910 ntBASIC18.65■□□□□ 0.58
HLA-DOAP06340 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 ENPP7P5-201ENST00000541031 1031 ntBASIC18.65■□□□□ 0.58
HLA-DOAP06340 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 BTNL10-201ENST00000595971 695 ntBASIC18.65■□□□□ 0.58
HLA-DOAP06340 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
HLA-DOAP06340 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HLA-DOAP06340 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
HLA-DOAP06340 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
HLA-DOAP06340 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
HLA-DOAP06340 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
HLA-DOAP06340 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HLA-DOAP06340 C1QBPP1-201ENST00000400117 770 ntBASIC18.64■□□□□ 0.57
HLA-DOAP06340 ACTG1P3-201ENST00000431775 1114 ntBASIC18.64■□□□□ 0.57
HLA-DOAP06340 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC18.64■□□□□ 0.57
HLA-DOAP06340 VDAC1P7-201ENST00000462417 847 ntBASIC18.64■□□□□ 0.57
HLA-DOAP06340 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms