Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
LMX1BO60663 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
LMX1BO60663 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 TNRC18P2-201ENST00000417666 2714 ntBASIC14.05□□□□□ -0.16
LMX1BO60663 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.05□□□□□ -0.16
LMX1BO60663 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 KRT18P34-201ENST00000488218 1270 ntBASIC14.05□□□□□ -0.16
LMX1BO60663 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.05□□□□□ -0.16
LMX1BO60663 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 AC109635.5-201ENST00000533593 962 ntBASIC14.05□□□□□ -0.16
LMX1BO60663 DUX4L27-201ENST00000554796 1261 ntBASIC14.05□□□□□ -0.16
LMX1BO60663 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.05□□□□□ -0.16
LMX1BO60663 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
LMX1BO60663 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.05□□□□□ -0.16
LMX1BO60663 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LMX1BO60663 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.05□□□□□ -0.16
LMX1BO60663 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.05□□□□□ -0.16
LMX1BO60663 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
LMX1BO60663 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 RN7SL589P-201ENST00000481268 310 ntBASIC14.04□□□□□ -0.16
LMX1BO60663 AC069335.1-201ENST00000489972 472 ntBASIC14.04□□□□□ -0.16
LMX1BO60663 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.04□□□□□ -0.16
LMX1BO60663 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.04□□□□□ -0.16
LMX1BO60663 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.04□□□□□ -0.16
LMX1BO60663 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LMX1BO60663 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.04□□□□□ -0.16
LMX1BO60663 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.04□□□□□ -0.16
LMX1BO60663 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms