Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.02□□□□□ -0.16
RHBDD3Q9Y3P4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 AL022342.1-201ENST00000400363 863 ntBASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.02□□□□□ -0.17
RHBDD3Q9Y3P4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AC097376.2-205ENST00000610159 5334 ntBASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 MIR574-201ENST00000385209 96 ntBASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 POLD2P1-201ENST00000511220 997 ntBASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 PRYP6-201ENST00000514804 343 ntBASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 KRT18P58-201ENST00000527480 1120 ntBASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AC091812.2-201ENST00000619081 385 ntBASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 AP003680.1-201ENST00000598970 3660 ntBASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.01□□□□□ -0.17
RHBDD3Q9Y3P4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms