Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 AP3S2-216ENST00000617003 1561 ntBASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 AC004832.2-201ENST00000426397 482 ntBASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
LIMCH1Q9UPQ0 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 MIR574-201ENST00000385209 96 ntBASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 AC069335.1-201ENST00000489972 472 ntBASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 KRT18P58-201ENST00000527480 1120 ntBASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 SLC25A39P2-201ENST00000537614 270 ntBASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.77■□□□□ 0.6
LIMCH1Q9UPQ0 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
LIMCH1Q9UPQ0 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.77■□□□□ 0.59
LIMCH1Q9UPQ0 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.77■□□□□ 0.59
LIMCH1Q9UPQ0 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LIMCH1Q9UPQ0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 UXT-AS1-201ENST00000590504 1525 ntBASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 MKNK2P1-201ENST00000437526 628 ntBASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 AC026979.3-201ENST00000607315 403 ntBASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LIMCH1Q9UPQ0 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 AP002414.2-201ENST00000591780 3365 ntBASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LIMCH1Q9UPQ0 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms