Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 MIR1909-201ENST00000411312 80 ntBASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 RAB43P1-201ENST00000561790 589 ntBASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 AC025048.3-201ENST00000590609 569 ntBASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 MIR4321-201ENST00000592276 80 ntBASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 AL365330.1-201ENST00000607459 531 ntBASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 AC005702.4-201ENST00000618393 416 ntBASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 U82695.1-201ENST00000635752 1889 ntBASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
TM9SF3Q9HD45 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 AL136982.4-201ENST00000437689 1740 ntBASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 FO393414.2-201ENST00000405153 598 ntBASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 NEU3-203ENST00000529024 581 ntTSL 3 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 TIMM17BP1-201ENST00000545713 516 ntBASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 MIR6805-201ENST00000615055 62 ntBASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 CYP4F24P-201ENST00000586049 1580 ntBASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 LINC01144-201ENST00000626198 1710 ntBASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.94■□□□□ 0.14
TM9SF3Q9HD45 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
TM9SF3Q9HD45 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms