Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 GPS2P2-201ENST00000430745 888 ntBASIC15.24■□□□□ 0.03
BRF2Q9HAW0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 AC010327.4-202ENST00000591484 748 ntBASIC15.24■□□□□ 0.03
BRF2Q9HAW0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 AC011270.2-201ENST00000624293 2550 ntBASIC15.24■□□□□ 0.03
BRF2Q9HAW0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
BRF2Q9HAW0 AL035456.1-201ENST00000456064 1369 ntBASIC15.24■□□□□ 0.03
BRF2Q9HAW0 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 FO393414.2-201ENST00000405153 598 ntBASIC15.23■□□□□ 0.03
BRF2Q9HAW0 SPDYE17-201ENST00000412399 783 ntBASIC15.23■□□□□ 0.03
BRF2Q9HAW0 AC136604.1-201ENST00000418535 575 ntBASIC15.23■□□□□ 0.03
BRF2Q9HAW0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 RBPMS2P1-201ENST00000437762 623 ntBASIC15.23■□□□□ 0.03
BRF2Q9HAW0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 BANF1P1-201ENST00000553684 263 ntBASIC15.23■□□□□ 0.03
BRF2Q9HAW0 HNRNPUP1-201ENST00000554987 333 ntBASIC15.23■□□□□ 0.03
BRF2Q9HAW0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 AC007967.4-201ENST00000614700 386 ntBASIC15.23■□□□□ 0.03
BRF2Q9HAW0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
BRF2Q9HAW0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.22■□□□□ 0.03
BRF2Q9HAW0 SPDYE14P-201ENST00000442619 822 ntBASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms