Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNGAP1Q96PV0 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
SYNGAP1Q96PV0 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNGAP1Q96PV0 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
SYNGAP1Q96PV0 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 TOMM22P5-201ENST00000416399 439 ntBASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 SLC25A47P1-201ENST00000531577 414 ntBASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 CU634019.7-201ENST00000624153 1185 ntBASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 FP236241.2-201ENST00000624906 1185 ntBASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SYNGAP1Q96PV0 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 FAM86LP-201ENST00000478302 853 ntBASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SYNGAP1Q96PV0 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 BNIP3P1-202ENST00000550043 1585 ntBASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
SYNGAP1Q96PV0 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 WNT11-204ENST00000621122 789 ntTSL 5 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SYNGAP1Q96PV0 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms