Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 AL136379.1-201ENST00000623471 2642 ntBASIC17.26■□□□□ 0.35
CCDC42Q96M95 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.26■□□□□ 0.35
CCDC42Q96M95 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC42Q96M95 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC42Q96M95 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 AC112693.3-201ENST00000624819 1983 ntBASIC17.24■□□□□ 0.35
CCDC42Q96M95 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 AC025580.3-201ENST00000617932 1424 ntBASIC17.24■□□□□ 0.35
CCDC42Q96M95 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 AL161645.1-201ENST00000622716 1255 ntBASIC17.24■□□□□ 0.35
CCDC42Q96M95 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 C18orf15-201ENST00000623680 2534 ntBASIC17.24■□□□□ 0.35
CCDC42Q96M95 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.24■□□□□ 0.35
CCDC42Q96M95 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CCDC42Q96M95 TCAF2P1-201ENST00000291129 2421 ntBASIC17.23■□□□□ 0.35
CCDC42Q96M95 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.23■□□□□ 0.35
CCDC42Q96M95 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CCDC42Q96M95 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms