Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 PAWRP1-201ENST00000451083 565 ntBASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 AC006504.4-201ENST00000592118 1568 ntBASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 AL109954.1-202ENST00000564051 2148 ntBASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
DEPDC4Q8N2C3 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
DEPDC4Q8N2C3 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 AC136621.1-201ENST00000624017 2304 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 ELK2BP-201ENST00000415014 1224 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 BX842568.4-201ENST00000421222 227 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 MIR3687-2-201ENST00000577708 61 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 AL671883.3-201ENST00000603274 991 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 AC008667.4-201ENST00000607370 168 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 MIR3687-1-201ENST00000614492 61 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 REXO1L3P-201ENST00000622202 1288 ntBASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
DEPDC4Q8N2C3 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.94□□□□□ -0.02
DEPDC4Q8N2C3 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms