Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 SPDYE17-201ENST00000412399 783 ntBASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 AC109322.1-201ENST00000524499 1264 ntBASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 AL139400.1-201ENST00000366220 510 ntBASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 AP001160.2-201ENST00000596071 487 ntBASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC65Q8IXS2 AC068587.6-202ENST00000641839 5619 ntBASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 AC004449.1-201ENST00000564240 433 ntBASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 MIR4313-201ENST00000580760 101 ntBASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC65Q8IXS2 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms