Protein–RNA interactions for Protein: Q5ST30

VARS2, Valine--tRNA ligase, mitochondrial, humanhuman

Known RBP Predictions only

Length 1,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2Q5ST30 AC018892.3-201ENST00000623986 2499 ntBASIC16.84■□□□□ 0.29
VARS2Q5ST30 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VARS2Q5ST30 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.83■□□□□ 0.29
VARS2Q5ST30 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.83■□□□□ 0.29
VARS2Q5ST30 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VARS2Q5ST30 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VARS2Q5ST30 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 AC079776.1-201ENST00000401540 1152 ntBASIC16.83■□□□□ 0.28
VARS2Q5ST30 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 RN7SKP199-201ENST00000410325 305 ntBASIC16.83■□□□□ 0.28
VARS2Q5ST30 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 AC007389.4-201ENST00000454674 793 ntBASIC16.83■□□□□ 0.28
VARS2Q5ST30 ACA64.2-201ENST00000459014 129 ntBASIC16.83■□□□□ 0.28
VARS2Q5ST30 FAM86LP-201ENST00000478302 853 ntBASIC16.83■□□□□ 0.28
VARS2Q5ST30 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VARS2Q5ST30 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VARS2Q5ST30 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 AC112492.5-201ENST00000421897 457 ntBASIC16.82■□□□□ 0.28
VARS2Q5ST30 AL442647.2-201ENST00000429864 857 ntBASIC16.82■□□□□ 0.28
VARS2Q5ST30 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 KRT17P8-201ENST00000540749 863 ntBASIC16.82■□□□□ 0.28
VARS2Q5ST30 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 AC106886.1-201ENST00000568660 600 ntBASIC16.82■□□□□ 0.28
VARS2Q5ST30 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VARS2Q5ST30 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.82■□□□□ 0.28
VARS2Q5ST30 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.81■□□□□ 0.28
VARS2Q5ST30 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VARS2Q5ST30 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VARS2Q5ST30 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms