Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.55■□□□□ 0.08
YBX1P67809 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.55■□□□□ 0.08
YBX1P67809 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.55■□□□□ 0.08
YBX1P67809 RFPL4AP1-201ENST00000530883 850 ntBASIC15.55■□□□□ 0.08
YBX1P67809 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.55■□□□□ 0.08
YBX1P67809 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.55■□□□□ 0.08
YBX1P67809 RN7SL828P-201ENST00000607615 303 ntBASIC15.55■□□□□ 0.08
YBX1P67809 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 AC007967.4-201ENST00000614700 386 ntBASIC15.55■□□□□ 0.08
YBX1P67809 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.55■□□□□ 0.08
YBX1P67809 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
YBX1P67809 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
YBX1P67809 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.55■□□□□ 0.08
YBX1P67809 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
YBX1P67809 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.55■□□□□ 0.08
YBX1P67809 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.54■□□□□ 0.08
YBX1P67809 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
YBX1P67809 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.54■□□□□ 0.08
YBX1P67809 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
YBX1P67809 AC018892.3-201ENST00000623986 2499 ntBASIC15.54■□□□□ 0.08
YBX1P67809 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
YBX1P67809 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
YBX1P67809 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.54■□□□□ 0.08
YBX1P67809 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 SPDYE7P-202ENST00000420373 878 ntBASIC15.54■□□□□ 0.08
YBX1P67809 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 MTND6P24-201ENST00000440466 518 ntBASIC15.54■□□□□ 0.08
YBX1P67809 SATB1-217ENST00000493952 626 ntTSL 3 BASIC15.54■□□□□ 0.08
YBX1P67809 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.54■□□□□ 0.08
YBX1P67809 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.54■□□□□ 0.08
YBX1P67809 AL390955.2-201ENST00000603032 514 ntBASIC15.54■□□□□ 0.08
YBX1P67809 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
YBX1P67809 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
YBX1P67809 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 AL691432.1-201ENST00000596308 1422 ntBASIC15.53■□□□□ 0.08
YBX1P67809 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.53■□□□□ 0.08
YBX1P67809 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
YBX1P67809 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
YBX1P67809 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.53■□□□□ 0.08
YBX1P67809 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.53■□□□□ 0.08
YBX1P67809 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 AL353705.2-201ENST00000428243 662 ntBASIC15.53■□□□□ 0.08
YBX1P67809 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.53■□□□□ 0.08
YBX1P67809 KLF2P3-201ENST00000451977 1087 ntBASIC15.53■□□□□ 0.08
YBX1P67809 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.53■□□□□ 0.08
YBX1P67809 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.53■□□□□ 0.08
YBX1P67809 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 AC125807.1-201ENST00000483097 614 ntBASIC15.53■□□□□ 0.08
YBX1P67809 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.53■□□□□ 0.08
YBX1P67809 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.53■□□□□ 0.08
YBX1P67809 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.53■□□□□ 0.08
YBX1P67809 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.53■□□□□ 0.08
YBX1P67809 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.53■□□□□ 0.08
YBX1P67809 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.53■□□□□ 0.08
YBX1P67809 AC015911.4-201ENST00000588022 1070 ntBASIC15.53■□□□□ 0.08
YBX1P67809 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
YBX1P67809 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.53■□□□□ 0.08
YBX1P67809 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms