Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC12.99□□□□□ -0.33
LMO4P61968 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 RPL28-204ENST00000431533 590 ntTSL 2 BASIC12.99□□□□□ -0.33
LMO4P61968 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC12.99□□□□□ -0.33
LMO4P61968 AC026410.3-201ENST00000514280 936 ntBASIC12.99□□□□□ -0.33
LMO4P61968 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
LMO4P61968 AC104989.1-201ENST00000519711 778 ntBASIC12.99□□□□□ -0.33
LMO4P61968 PTP4A1P2-201ENST00000546033 454 ntBASIC12.99□□□□□ -0.33
LMO4P61968 RPL28-206ENST00000558752 671 ntTSL 3 BASIC12.99□□□□□ -0.33
LMO4P61968 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.99□□□□□ -0.33
LMO4P61968 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.99□□□□□ -0.33
LMO4P61968 AC133552.6-201ENST00000613406 534 ntBASIC12.99□□□□□ -0.33
LMO4P61968 PFAS-212ENST00000625942 396 ntTSL 5 BASIC12.99□□□□□ -0.33
LMO4P61968 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC12.99□□□□□ -0.33
LMO4P61968 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC12.99□□□□□ -0.33
LMO4P61968 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LMO4P61968 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC12.99□□□□□ -0.33
LMO4P61968 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LMO4P61968 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.99□□□□□ -0.33
LMO4P61968 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.99□□□□□ -0.33
LMO4P61968 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
LMO4P61968 GCK-209ENST00000616242 2260 ntTSL 5 BASIC12.99□□□□□ -0.33
LMO4P61968 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
LMO4P61968 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
LMO4P61968 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC12.98□□□□□ -0.33
LMO4P61968 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
LMO4P61968 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC12.98□□□□□ -0.33
LMO4P61968 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC12.98□□□□□ -0.33
LMO4P61968 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC12.98□□□□□ -0.33
LMO4P61968 ANKRD19P-201ENST00000338192 862 ntBASIC12.98□□□□□ -0.33
LMO4P61968 MGST3-203ENST00000367885 680 ntTSL 2 BASIC12.98□□□□□ -0.33
LMO4P61968 AC005229.1-201ENST00000392885 409 ntBASIC12.98□□□□□ -0.33
LMO4P61968 AL133267.1-201ENST00000398220 340 ntBASIC12.98□□□□□ -0.33
LMO4P61968 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 HLA-V-201ENST00000429037 534 ntBASIC12.98□□□□□ -0.33
LMO4P61968 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC12.98□□□□□ -0.33
LMO4P61968 KRT223P-202ENST00000449164 1292 ntBASIC12.98□□□□□ -0.33
LMO4P61968 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC12.98□□□□□ -0.33
LMO4P61968 AC068587.3-201ENST00000526613 355 ntBASIC12.98□□□□□ -0.33
LMO4P61968 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC12.98□□□□□ -0.33
LMO4P61968 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
LMO4P61968 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 AC009486.1-201ENST00000569860 813 ntBASIC12.98□□□□□ -0.33
LMO4P61968 CLUHP6-201ENST00000580789 941 ntBASIC12.98□□□□□ -0.33
LMO4P61968 AL022328.1-201ENST00000610050 478 ntBASIC12.98□□□□□ -0.33
LMO4P61968 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 WNT11-204ENST00000621122 789 ntTSL 5 BASIC12.98□□□□□ -0.33
LMO4P61968 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC12.98□□□□□ -0.33
LMO4P61968 AC069224.1-201ENST00000566372 1715 ntBASIC12.98□□□□□ -0.33
LMO4P61968 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
LMO4P61968 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 AC124067.4-201ENST00000519691 2379 ntBASIC12.98□□□□□ -0.33
LMO4P61968 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LMO4P61968 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 DRD5P1-201ENST00000456605 1438 ntBASIC12.97□□□□□ -0.33
LMO4P61968 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 PRORSD1P-202ENST00000563365 2154 ntBASIC12.97□□□□□ -0.33
LMO4P61968 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.97□□□□□ -0.33
LMO4P61968 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LMO4P61968 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LMO4P61968 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms