Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PKNOX1P55347 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
PKNOX1P55347 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PKNOX1P55347 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
PKNOX1P55347 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 AC106881.1-201ENST00000605849 3329 ntBASIC15.7■□□□□ 0.1
PKNOX1P55347 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 CICP24-201ENST00000605464 2705 ntBASIC15.7■□□□□ 0.1
PKNOX1P55347 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 AC020658.6-201ENST00000623564 1870 ntBASIC15.7■□□□□ 0.1
PKNOX1P55347 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.7■□□□□ 0.1
PKNOX1P55347 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.7■□□□□ 0.1
PKNOX1P55347 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 AC034105.1-201ENST00000563488 319 ntBASIC15.7■□□□□ 0.1
PKNOX1P55347 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 AC068137.2-201ENST00000605408 478 ntBASIC15.7■□□□□ 0.1
PKNOX1P55347 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.7■□□□□ 0.1
PKNOX1P55347 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.7■□□□□ 0.1
PKNOX1P55347 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.7■□□□□ 0.1
PKNOX1P55347 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PKNOX1P55347 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PKNOX1P55347 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PKNOX1P55347 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.69■□□□□ 0.1
PKNOX1P55347 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 AC104109.2-201ENST00000602919 1418 ntBASIC15.69■□□□□ 0.1
PKNOX1P55347 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PKNOX1P55347 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
PKNOX1P55347 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PKNOX1P55347 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
PKNOX1P55347 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 AC138035.3-201ENST00000622706 2791 ntBASIC15.69■□□□□ 0.1
PKNOX1P55347 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
PKNOX1P55347 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.69■□□□□ 0.1
PKNOX1P55347 AC002056.1-201ENST00000395613 760 ntBASIC15.69■□□□□ 0.1
PKNOX1P55347 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.69■□□□□ 0.1
PKNOX1P55347 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 TPM4P1-201ENST00000436100 807 ntBASIC15.69■□□□□ 0.1
PKNOX1P55347 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 AC018845.2-201ENST00000568326 409 ntBASIC15.69■□□□□ 0.1
PKNOX1P55347 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.69■□□□□ 0.1
PKNOX1P55347 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PKNOX1P55347 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms