Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG3P49916 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LIG3P49916 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG3P49916 AC211486.1-202ENST00000416371 468 ntBASIC16.86■□□□□ 0.29
LIG3P49916 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 AC211476.1-201ENST00000503899 468 ntBASIC16.86■□□□□ 0.29
LIG3P49916 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.86■□□□□ 0.29
LIG3P49916 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC16.86■□□□□ 0.29
LIG3P49916 AC091167.2-201ENST00000579581 588 ntBASIC16.86■□□□□ 0.29
LIG3P49916 AC134684.3-201ENST00000641758 218 ntBASIC16.86■□□□□ 0.29
LIG3P49916 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.86■□□□□ 0.29
LIG3P49916 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 CNTNAP3P2-201ENST00000617175 3861 ntBASIC16.86■□□□□ 0.29
LIG3P49916 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIG3P49916 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIG3P49916 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.86■□□□□ 0.29
LIG3P49916 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC16.85■□□□□ 0.29
LIG3P49916 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 HMGA1P7-201ENST00000406908 502 ntBASIC16.85■□□□□ 0.29
LIG3P49916 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.85■□□□□ 0.29
LIG3P49916 AC004967.1-201ENST00000453589 447 ntBASIC16.85■□□□□ 0.29
LIG3P49916 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.85■□□□□ 0.29
LIG3P49916 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.85■□□□□ 0.29
LIG3P49916 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 MPDU1-223ENST00000582151 728 ntBASIC16.85■□□□□ 0.29
LIG3P49916 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.85■□□□□ 0.29
LIG3P49916 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.85■□□□□ 0.29
LIG3P49916 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LIG3P49916 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
LIG3P49916 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.85■□□□□ 0.29
LIG3P49916 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
LIG3P49916 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIG3P49916 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LIG3P49916 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG3P49916 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 ELL2P1-201ENST00000413990 1906 ntBASIC16.84■□□□□ 0.29
LIG3P49916 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG3P49916 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 HCG4-201ENST00000418983 998 ntBASIC16.84■□□□□ 0.29
LIG3P49916 RPS8P6-201ENST00000426177 609 ntBASIC16.84■□□□□ 0.29
LIG3P49916 AC140658.5-201ENST00000438532 169 ntBASIC16.84■□□□□ 0.29
LIG3P49916 CEND1P1-201ENST00000451006 455 ntBASIC16.84■□□□□ 0.29
LIG3P49916 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
LIG3P49916 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 AC092902.6-201ENST00000641783 218 ntBASIC16.84■□□□□ 0.29
LIG3P49916 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
LIG3P49916 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIG3P49916 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.84■□□□□ 0.29
LIG3P49916 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms