Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC13.12□□□□□ -0.31
CDX1P47902 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.12□□□□□ -0.31
CDX1P47902 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.12□□□□□ -0.31
CDX1P47902 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC13.12□□□□□ -0.31
CDX1P47902 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CDX1P47902 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 OR2I1P-210ENST00000642037 4691 ntBASIC13.12□□□□□ -0.31
CDX1P47902 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.12□□□□□ -0.31
CDX1P47902 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CDX1P47902 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.11□□□□□ -0.31
CDX1P47902 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CDX1P47902 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC13.11□□□□□ -0.31
CDX1P47902 HCG4-201ENST00000418983 998 ntBASIC13.11□□□□□ -0.31
CDX1P47902 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.11□□□□□ -0.31
CDX1P47902 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.11□□□□□ -0.31
CDX1P47902 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC13.11□□□□□ -0.31
CDX1P47902 AC112191.1-201ENST00000523689 701 ntBASIC13.11□□□□□ -0.31
CDX1P47902 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.11□□□□□ -0.31
CDX1P47902 AC124947.2-201ENST00000547118 1133 ntBASIC13.11□□□□□ -0.31
CDX1P47902 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.11□□□□□ -0.31
CDX1P47902 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.11□□□□□ -0.31
CDX1P47902 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 AC091167.2-201ENST00000579581 588 ntBASIC13.11□□□□□ -0.31
CDX1P47902 MIR4469-201ENST00000583919 79 ntBASIC13.11□□□□□ -0.31
CDX1P47902 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC13.11□□□□□ -0.31
CDX1P47902 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 AC134684.3-201ENST00000641758 218 ntBASIC13.11□□□□□ -0.31
CDX1P47902 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC13.11□□□□□ -0.31
CDX1P47902 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 SBF1P1-201ENST00000444527 5631 ntBASIC13.11□□□□□ -0.31
CDX1P47902 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 ELL2P1-201ENST00000413990 1906 ntBASIC13.11□□□□□ -0.31
CDX1P47902 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.11□□□□□ -0.31
CDX1P47902 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 CICP20-201ENST00000443330 2801 ntBASIC13.11□□□□□ -0.31
CDX1P47902 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CDX1P47902 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CDX1P47902 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.11□□□□□ -0.31
CDX1P47902 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
CDX1P47902 LINC02012-201ENST00000608206 1725 ntBASIC13.1□□□□□ -0.31
CDX1P47902 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 FOS-208ENST00000555686 1496 ntTSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.1□□□□□ -0.31
CDX1P47902 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
CDX1P47902 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC13.1□□□□□ -0.31
CDX1P47902 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CDX1P47902 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC13.1□□□□□ -0.31
CDX1P47902 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.1□□□□□ -0.31
CDX1P47902 FAM58CP-201ENST00000435741 640 ntBASIC13.1□□□□□ -0.31
CDX1P47902 AP006288.1-201ENST00000446065 395 ntBASIC13.1□□□□□ -0.31
CDX1P47902 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.1□□□□□ -0.31
CDX1P47902 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.1□□□□□ -0.31
CDX1P47902 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms