Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.66■□□□□ 0.1
SHMT2P34897 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHMT2P34897 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.65■□□□□ 0.1
SHMT2P34897 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.65■□□□□ 0.1
SHMT2P34897 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHMT2P34897 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.65■□□□□ 0.1
SHMT2P34897 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
SHMT2P34897 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SHMT2P34897 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC15.65■□□□□ 0.1
SHMT2P34897 AL589739.1-201ENST00000607720 493 ntBASIC15.65■□□□□ 0.1
SHMT2P34897 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 AC073347.1-201ENST00000421633 2643 ntBASIC15.65■□□□□ 0.1
SHMT2P34897 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.65■□□□□ 0.1
SHMT2P34897 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SHMT2P34897 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SHMT2P34897 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SHMT2P34897 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.65■□□□□ 0.1
SHMT2P34897 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SHMT2P34897 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.64■□□□□ 0.1
SHMT2P34897 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC15.64■□□□□ 0.09
SHMT2P34897 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.64■□□□□ 0.09
SHMT2P34897 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
SHMT2P34897 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 FO538757.1-201ENST00000623083 1397 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 AL596087.1-201ENST00000400979 1969 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.64■□□□□ 0.09
SHMT2P34897 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
SHMT2P34897 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SHMT2P34897 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 AC055876.3-201ENST00000431496 288 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC15.64■□□□□ 0.09
SHMT2P34897 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.64■□□□□ 0.09
SHMT2P34897 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.64■□□□□ 0.09
SHMT2P34897 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.64■□□□□ 0.09
SHMT2P34897 AL355385.1-201ENST00000606123 409 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 AL133215.2-201ENST00000609242 977 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 AC138649.4-201ENST00000612222 287 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 SPDYE12P-201ENST00000618416 771 ntBASIC15.64■□□□□ 0.09
SHMT2P34897 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SHMT2P34897 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.64■□□□□ 0.09
SHMT2P34897 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SHMT2P34897 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHMT2P34897 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.63■□□□□ 0.09
SHMT2P34897 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHMT2P34897 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHMT2P34897 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHMT2P34897 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHMT2P34897 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.63■□□□□ 0.09
SHMT2P34897 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SHMT2P34897 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SHMT2P34897 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms