Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
COL4A5P29400 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A5P29400 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.71■□□□□ 0.59
COL4A5P29400 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
COL4A5P29400 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 AC007274.2-201ENST00000421675 662 ntBASIC18.71■□□□□ 0.59
COL4A5P29400 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A5P29400 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 MBP-227ENST00000526111 581 ntTSL 4 BASIC18.71■□□□□ 0.59
COL4A5P29400 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A5P29400 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A5P29400 RN7SL774P-201ENST00000577467 290 ntBASIC18.71■□□□□ 0.59
COL4A5P29400 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 AC025181.2-201ENST00000606994 802 ntBASIC18.71■□□□□ 0.59
COL4A5P29400 AP003419.4-201ENST00000616071 517 ntBASIC18.71■□□□□ 0.59
COL4A5P29400 CU633904.3-201ENST00000624042 1029 ntBASIC18.71■□□□□ 0.59
COL4A5P29400 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 FLJ38576-201ENST00000623820 2459 ntBASIC18.71■□□□□ 0.59
COL4A5P29400 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A5P29400 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
COL4A5P29400 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A5P29400 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC18.71■□□□□ 0.58
COL4A5P29400 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
COL4A5P29400 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.71■□□□□ 0.58
COL4A5P29400 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A5P29400 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
COL4A5P29400 MIR769-201ENST00000390225 118 ntBASIC18.7■□□□□ 0.58
COL4A5P29400 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A5P29400 AC069218.1-201ENST00000435269 762 ntBASIC18.7■□□□□ 0.58
COL4A5P29400 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A5P29400 AC024681.1-201ENST00000521917 487 ntBASIC18.7■□□□□ 0.58
COL4A5P29400 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A5P29400 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A5P29400 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A5P29400 AC244157.2-201ENST00000616239 1006 ntBASIC18.7■□□□□ 0.58
COL4A5P29400 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A5P29400 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A5P29400 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A5P29400 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL4A5P29400 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL4A5P29400 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
COL4A5P29400 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A5P29400 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL4A5P29400 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A5P29400 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A5P29400 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 TPM3P8-201ENST00000330554 643 ntBASIC18.69■□□□□ 0.58
COL4A5P29400 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A5P29400 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A5P29400 AL139094.1-201ENST00000405549 1188 ntBASIC18.69■□□□□ 0.58
COL4A5P29400 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 EEF1DP6-201ENST00000449232 372 ntBASIC18.69■□□□□ 0.58
COL4A5P29400 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A5P29400 RN7SL555P-201ENST00000584742 339 ntBASIC18.69■□□□□ 0.58
COL4A5P29400 OR10B1P-201ENST00000601666 907 ntBASIC18.69■□□□□ 0.58
COL4A5P29400 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A5P29400 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL4A5P29400 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A5P29400 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL4A5P29400 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A5P29400 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 AC018695.7-201ENST00000624587 2492 ntBASIC18.69■□□□□ 0.58
COL4A5P29400 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.69■□□□□ 0.58
COL4A5P29400 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL4A5P29400 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.69■□□□□ 0.58
COL4A5P29400 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL4A5P29400 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms