Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 POM121L10P-201ENST00000436994 1285 ntBASIC17.42■□□□□ 0.38
COL6A1P12109 PHKG1P2-201ENST00000457537 863 ntBASIC17.42■□□□□ 0.38
COL6A1P12109 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC17.42■□□□□ 0.38
COL6A1P12109 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC17.42■□□□□ 0.38
COL6A1P12109 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A1P12109 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
COL6A1P12109 AC015910.1-201ENST00000579400 975 ntBASIC17.42■□□□□ 0.38
COL6A1P12109 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC17.42■□□□□ 0.38
COL6A1P12109 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A1P12109 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.42■□□□□ 0.38
COL6A1P12109 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
COL6A1P12109 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
COL6A1P12109 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
COL6A1P12109 AL592424.1-201ENST00000563624 1536 ntBASIC17.42■□□□□ 0.38
COL6A1P12109 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
COL6A1P12109 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
COL6A1P12109 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL6A1P12109 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.41■□□□□ 0.38
COL6A1P12109 PTPA-217ENST00000434095 870 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.41■□□□□ 0.38
COL6A1P12109 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.41■□□□□ 0.38
COL6A1P12109 AL590640.2-201ENST00000457038 527 ntBASIC17.41■□□□□ 0.38
COL6A1P12109 AC126915.1-201ENST00000522847 1038 ntBASIC17.41■□□□□ 0.38
COL6A1P12109 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.41■□□□□ 0.38
COL6A1P12109 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.41■□□□□ 0.38
COL6A1P12109 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 HNRNPUP1-201ENST00000554987 333 ntBASIC17.41■□□□□ 0.38
COL6A1P12109 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC17.41■□□□□ 0.38
COL6A1P12109 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.41■□□□□ 0.38
COL6A1P12109 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.41■□□□□ 0.38
COL6A1P12109 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.41■□□□□ 0.38
COL6A1P12109 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.41■□□□□ 0.38
COL6A1P12109 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
COL6A1P12109 HLA-A-202ENST00000376806 1854 ntBASIC17.41■□□□□ 0.38
COL6A1P12109 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
COL6A1P12109 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.41■□□□□ 0.38
COL6A1P12109 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A1P12109 AC009053.2-201ENST00000563701 2365 ntBASIC17.4■□□□□ 0.38
COL6A1P12109 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A1P12109 AC005915.1-201ENST00000624912 2018 ntBASIC17.4■□□□□ 0.38
COL6A1P12109 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
COL6A1P12109 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A1P12109 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A1P12109 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.4■□□□□ 0.38
COL6A1P12109 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 HSPB1P2-201ENST00000448722 546 ntBASIC17.4■□□□□ 0.38
COL6A1P12109 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A1P12109 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A1P12109 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.4■□□□□ 0.38
COL6A1P12109 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A1P12109 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.4■□□□□ 0.38
COL6A1P12109 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 AC092978.1-202ENST00000637590 1327 ntBASIC17.4■□□□□ 0.38
COL6A1P12109 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
COL6A1P12109 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
COL6A1P12109 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL6A1P12109 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL6A1P12109 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.38
COL6A1P12109 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL6A1P12109 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
COL6A1P12109 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A1P12109 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A1P12109 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
COL6A1P12109 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.39■□□□□ 0.37
COL6A1P12109 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL6A1P12109 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
COL6A1P12109 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms