Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.78■□□□□ 0.6
HMGB1P09429 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 CETN4P-206ENST00000642099 2168 ntBASIC18.78■□□□□ 0.6
HMGB1P09429 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 FER1L4-210ENST00000615531 5998 ntBASIC18.78■□□□□ 0.6
HMGB1P09429 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 AC109322.1-201ENST00000524499 1264 ntBASIC18.78■□□□□ 0.6
HMGB1P09429 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.78■□□□□ 0.6
HMGB1P09429 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.78■□□□□ 0.6
HMGB1P09429 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGB1P09429 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.78■□□□□ 0.6
HMGB1P09429 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGB1P09429 AC087481.3-201ENST00000602886 1894 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 AC090616.6-203ENST00000579186 1945 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
HMGB1P09429 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 CNN2P2-201ENST00000443536 909 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC18.77■□□□□ 0.6
HMGB1P09429 CNN2P3-201ENST00000450201 906 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC18.77■□□□□ 0.6
HMGB1P09429 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 AC025678.2-201ENST00000562061 970 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 AC015911.4-201ENST00000588022 1070 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.77■□□□□ 0.6
HMGB1P09429 AL589739.1-201ENST00000607720 493 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 AL136317.3-201ENST00000618497 906 ntBASIC18.77■□□□□ 0.6
HMGB1P09429 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
HMGB1P09429 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.77■□□□□ 0.6
HMGB1P09429 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGB1P09429 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
HMGB1P09429 AC092127.1-201ENST00000567093 3455 ntBASIC18.77■□□□□ 0.59
HMGB1P09429 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.77■□□□□ 0.59
HMGB1P09429 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.77■□□□□ 0.59
HMGB1P09429 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HMGB1P09429 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HMGB1P09429 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HMGB1P09429 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGB1P09429 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB1P09429 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGB1P09429 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB1P09429 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB1P09429 AC126177.1-201ENST00000547829 2218 ntBASIC18.76■□□□□ 0.59
HMGB1P09429 AL139400.1-201ENST00000366220 510 ntBASIC18.76■□□□□ 0.59
HMGB1P09429 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB1P09429 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.76■□□□□ 0.59
HMGB1P09429 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGB1P09429 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
HMGB1P09429 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HMGB1P09429 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.76■□□□□ 0.59
HMGB1P09429 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.76■□□□□ 0.59
HMGB1P09429 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC18.76■□□□□ 0.59
HMGB1P09429 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HMGB1P09429 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.76■□□□□ 0.59
HMGB1P09429 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HMGB1P09429 AC104640.1-201ENST00000562617 2109 ntBASIC18.76■□□□□ 0.59
HMGB1P09429 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms