Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL359711.2-201ENST00000563105 872 ntBASIC18.69■□□□□ 0.58
HLA-DOAP06340 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 MIR6805-201ENST00000615055 62 ntBASIC18.69■□□□□ 0.58
HLA-DOAP06340 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 AL596087.1-201ENST00000400979 1969 ntBASIC18.68■□□□□ 0.58
HLA-DOAP06340 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.68■□□□□ 0.58
HLA-DOAP06340 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 INTS4P2-202ENST00000614726 2019 ntBASIC18.68■□□□□ 0.58
HLA-DOAP06340 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 KRT18P43-201ENST00000469825 1281 ntBASIC18.68■□□□□ 0.58
HLA-DOAP06340 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 AC018892.3-201ENST00000623986 2499 ntBASIC18.68■□□□□ 0.58
HLA-DOAP06340 AC092364.2-201ENST00000596710 2692 ntBASIC18.68■□□□□ 0.58
HLA-DOAP06340 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HLA-DOAP06340 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HLA-DOAP06340 HNRNPA1P48-201ENST00000562726 1377 ntBASIC18.68■□□□□ 0.58
HLA-DOAP06340 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 AL049840.4-201ENST00000602422 811 ntBASIC18.67■□□□□ 0.58
HLA-DOAP06340 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.67■□□□□ 0.58
HLA-DOAP06340 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 LRRFIP1P1-201ENST00000498774 2246 ntBASIC18.67■□□□□ 0.58
HLA-DOAP06340 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 MTHFR-217ENST00000641820 1569 ntBASIC18.67■□□□□ 0.58
HLA-DOAP06340 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HLA-DOAP06340 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HLA-DOAP06340 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms