Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 AC099568.2-201ENST00000609194 695 ntBASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 AL662799.1-202ENST00000614205 422 ntBASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 AC127383.1-201ENST00000444697 1800 ntBASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM35Q9UPQ4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 AL353779.1-201ENST00000434793 351 ntBASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM35Q9UPQ4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 DKFZP434H168-201ENST00000567381 1905 ntBASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 AL121723.1-201ENST00000445194 1519 ntBASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM35Q9UPQ4 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 OSM-203ENST00000403463 464 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 WASH4P-201ENST00000564273 1246 ntBASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 AC132872.4-202ENST00000622924 2756 ntBASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM35Q9UPQ4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 AC055876.2-201ENST00000531834 546 ntBASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 TP53TG3HP-202ENST00000569755 579 ntBASIC20.56■□□□□ 0.88
TRIM35Q9UPQ4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms