Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 AC027601.4-201ENST00000611259 610 ntBASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 GRK6P1-201ENST00000400595 1711 ntBASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 TMBIM7P-203ENST00000641617 1718 ntBASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC39Q9UFE4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 AC005622.1-201ENST00000636801 1703 ntBASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 REXO1L8P-201ENST00000604378 1897 ntBASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.55■□□□□ 0.56
CCDC39Q9UFE4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 MED15P5-201ENST00000423150 992 ntBASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 KRT18P3-201ENST00000451602 1288 ntBASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 AC074386.1-202ENST00000463561 864 ntBASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 KRT18P34-201ENST00000488218 1270 ntBASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
CCDC39Q9UFE4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms