Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AL512361.1-201ENST00000554200 418 ntBASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AL158211.3-201ENST00000607385 239 ntBASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AC092850.2-201ENST00000623821 2697 ntBASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS54Q9P1Q0 AC105917.1-201ENST00000506637 2539 ntBASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 IGHV3-42-201ENST00000520410 361 ntBASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 AC097359.3-201ENST00000603982 1210 ntBASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 AC092127.1-201ENST00000567093 3455 ntBASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS54Q9P1Q0 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 AC100757.3-201ENST00000622361 1406 ntBASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 FO393414.2-201ENST00000405153 598 ntBASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 AL390754.1-201ENST00000619088 582 ntBASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 AL033527.5-202ENST00000641632 1098 ntBASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
VPS54Q9P1Q0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms