Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 RPS2P1-201ENST00000434010 821 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AC091304.2-201ENST00000564639 760 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 MIR3652-201ENST00000579335 131 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AL356488.2-201ENST00000602755 427 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AC004790.2-201ENST00000623588 572 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 KRT8P44-201ENST00000441609 1350 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AC139749.1-202ENST00000617529 3139 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 AL589702.1-201ENST00000641229 1509 ntBASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
CCDC28BQ9BUN5 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC134407.2-201ENST00000625089 1978 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 GPX1P2-201ENST00000429271 606 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC108073.2-201ENST00000464002 357 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC109635.5-201ENST00000533593 962 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC008735.5-201ENST00000623544 497 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC005912.2-201ENST00000619492 2400 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 AC126365.1-201ENST00000578585 1514 ntBASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CCDC28BQ9BUN5 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC15.56■□□□□ 0.08
CCDC28BQ9BUN5 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms