Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
TRIM56Q9BRZ2 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 AL136379.1-201ENST00000623471 2642 ntBASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 KRT18P13-201ENST00000400056 1290 ntBASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 AC140113.2-201ENST00000604370 208 ntBASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 WASH6P-202ENST00000359512 1437 ntBASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 FOXO1B-201ENST00000504678 1527 ntBASIC16.35■□□□□ 0.21
TRIM56Q9BRZ2 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 HAUS4P1-201ENST00000406739 1145 ntBASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 AC074386.1-202ENST00000463561 864 ntBASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 PRYP6-201ENST00000514804 343 ntBASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 AC002347.1-201ENST00000569543 541 ntBASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 AC139530.3-201ENST00000620344 690 ntBASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM56Q9BRZ2 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms