Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 LRRFIP1P1-201ENST00000498774 2246 ntBASIC17.28■□□□□ 0.36
CCDC42Q96M95 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 AC093909.1-201ENST00000504731 1122 ntBASIC17.27■□□□□ 0.36
CCDC42Q96M95 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 RNA5SP415-201ENST00000517246 115 ntBASIC17.27■□□□□ 0.36
CCDC42Q96M95 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 AL691432.3-201ENST00000621860 400 ntBASIC17.27■□□□□ 0.36
CCDC42Q96M95 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC42Q96M95 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC42Q96M95 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC42Q96M95 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC42Q96M95 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC42Q96M95 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC42Q96M95 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC42Q96M95 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC42Q96M95 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CCDC42Q96M95 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.35
CCDC42Q96M95 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC42Q96M95 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC42Q96M95 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC42Q96M95 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC42Q96M95 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 MIR600HG-201ENST00000449175 5984 ntBASIC17.26■□□□□ 0.35
CCDC42Q96M95 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 WASH6P-202ENST00000359512 1437 ntBASIC17.26■□□□□ 0.35
CCDC42Q96M95 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC42Q96M95 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC42Q96M95 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms