Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 ZBTB45P2-201ENST00000452245 1531 ntBASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 KRT18P64-201ENST00000434946 1219 ntBASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 NOC2LP1-201ENST00000450578 752 ntBASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 AC125604.1-201ENST00000496255 707 ntBASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 AL139011.1-202ENST00000642063 584 ntBASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.76■□□□□ 0.59
SMC1BQ8NDV3 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 AL354989.2-201ENST00000435838 1540 ntBASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 AL023775.1-201ENST00000454907 1746 ntBASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 SLED1-202ENST00000512051 380 ntBASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMC1BQ8NDV3 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 GPAA1P2-202ENST00000606848 1787 ntBASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 RN7SL181P-201ENST00000462921 277 ntBASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 AC022217.1-201ENST00000521069 738 ntBASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 AC015910.1-201ENST00000579400 975 ntBASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 KLK11-210ENST00000600362 759 ntTSL 3 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 AC244157.2-201ENST00000616239 1006 ntBASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 ETV2-208ENST00000621247 941 ntTSL 5 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.74■□□□□ 0.59
SMC1BQ8NDV3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms