Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 AC018892.3-201ENST00000623986 2499 ntBASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CCDC65Q8IXS2 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 TSEN15P1-201ENST00000423257 515 ntBASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 MTND6P24-201ENST00000440466 518 ntBASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AC069262.1-201ENST00000539058 672 ntBASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 AC046158.3-201ENST00000624947 2558 ntBASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CCDC65Q8IXS2 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 AL133215.2-201ENST00000609242 977 ntBASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CCDC65Q8IXS2 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC65Q8IXS2 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CCDC65Q8IXS2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC65Q8IXS2 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms