Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC60Q8IWA6 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AC024909.3-201ENST00000611513 2257 ntBASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 RN7SL752P-201ENST00000463779 287 ntBASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 WFDC1-204ENST00000613603 549 ntBASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 AL603832.2-201ENST00000566195 2125 ntBASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC60Q8IWA6 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC60Q8IWA6 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC60Q8IWA6 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC60Q8IWA6 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC60Q8IWA6 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 KRT17P7-201ENST00000451704 1104 ntBASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 AC036164.1-201ENST00000570544 333 ntBASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 AC132938.2-201ENST00000579188 680 ntBASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 MIR4313-201ENST00000580760 101 ntBASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 TMEM261P1-201ENST00000604899 340 ntBASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 AL591163.1-201ENST00000641757 987 ntBASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC60Q8IWA6 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.63■□□□□ 0.41
CCDC60Q8IWA6 AC112504.1-201ENST00000623415 1841 ntBASIC17.63■□□□□ 0.41
CCDC60Q8IWA6 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC60Q8IWA6 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC60Q8IWA6 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC60Q8IWA6 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC60Q8IWA6 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CCDC60Q8IWA6 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms