Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 NPTN-IT1-201ENST00000628401 2283 ntBASIC9.91□□□□□ -0.82
LINC00643Q86TS7 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AC073548.1-201ENST00000624088 1882 ntBASIC9.91□□□□□ -0.82
LINC00643Q86TS7 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 USP4-203ENST00000415188 1454 ntTSL 3 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AP000845.1-201ENST00000581677 2131 ntBASIC9.91□□□□□ -0.82
LINC00643Q86TS7 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 TBC1D3P2-203ENST00000581291 2088 ntTSL 1 (best) BASIC9.91□□□□□ -0.82
LINC00643Q86TS7 AC010980.2-201ENST00000587099 1412 ntBASIC9.9□□□□□ -0.82
LINC00643Q86TS7 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 LINC02228-203ENST00000641970 1355 ntBASIC9.9□□□□□ -0.82
LINC00643Q86TS7 TP73-209ENST00000603362 1668 ntTSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 PLB1-205ENST00000422425 5115 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 LSM12P1-201ENST00000411836 588 ntBASIC9.9□□□□□ -0.82
LINC00643Q86TS7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 AC024563.2-201ENST00000603282 481 ntBASIC9.9□□□□□ -0.82
LINC00643Q86TS7 MIR6084-201ENST00000622012 110 ntBASIC9.9□□□□□ -0.82
LINC00643Q86TS7 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 HLCS-207ENST00000612277 6112 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC9.9□□□□□ -0.82
LINC00643Q86TS7 TRIM80P-201ENST00000455685 2848 ntBASIC9.9□□□□□ -0.82
LINC00643Q86TS7 FAM219A-207ENST00000379089 3624 ntAPPRIS ALT1 TSL 3 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 LINC02188-202ENST00000569740 3775 ntTSL 4 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC9.9□□□□□ -0.83
LINC00643Q86TS7 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 PROM2-201ENST00000317620 4728 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
LINC00643Q86TS7 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
LINC00643Q86TS7 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms