Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.74■□□□□ 0.91
USP54Q70EL1 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC20.74■□□□□ 0.91
USP54Q70EL1 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC20.74■□□□□ 0.91
USP54Q70EL1 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC20.74■□□□□ 0.91
USP54Q70EL1 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
USP54Q70EL1 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC20.74■□□□□ 0.91
USP54Q70EL1 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 AC091271.1-201ENST00000611877 1162 ntBASIC20.74■□□□□ 0.91
USP54Q70EL1 ZACNP1-201ENST00000612259 710 ntBASIC20.74■□□□□ 0.91
USP54Q70EL1 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
USP54Q70EL1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC20.74■□□□□ 0.91
USP54Q70EL1 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
USP54Q70EL1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 AD000864.1-201ENST00000624076 2295 ntBASIC20.74■□□□□ 0.91
USP54Q70EL1 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
USP54Q70EL1 CYP2T1P-202ENST00000641596 2535 ntBASIC20.74■□□□□ 0.91
USP54Q70EL1 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP54Q70EL1 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP54Q70EL1 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC20.73■□□□□ 0.91
USP54Q70EL1 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
USP54Q70EL1 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP54Q70EL1 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC20.73■□□□□ 0.91
USP54Q70EL1 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
USP54Q70EL1 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP54Q70EL1 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.73■□□□□ 0.91
USP54Q70EL1 AC005730.2-201ENST00000564549 1184 ntBASIC20.73■□□□□ 0.91
USP54Q70EL1 AL603832.2-201ENST00000566195 2125 ntBASIC20.73■□□□□ 0.91
USP54Q70EL1 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC20.73■□□□□ 0.91
USP54Q70EL1 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC20.73■□□□□ 0.91
USP54Q70EL1 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.73■□□□□ 0.91
USP54Q70EL1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP54Q70EL1 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.73■□□□□ 0.91
USP54Q70EL1 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USP54Q70EL1 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.73■□□□□ 0.91
USP54Q70EL1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
USP54Q70EL1 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC20.73■□□□□ 0.91
USP54Q70EL1 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC20.73■□□□□ 0.91
USP54Q70EL1 AC105129.2-201ENST00000559536 390 ntBASIC20.73■□□□□ 0.91
USP54Q70EL1 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC20.73■□□□□ 0.91
USP54Q70EL1 PPY2P-201ENST00000582808 702 ntBASIC20.73■□□□□ 0.91
USP54Q70EL1 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP54Q70EL1 AC138028.6-201ENST00000616106 1482 ntBASIC20.73■□□□□ 0.91
USP54Q70EL1 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC20.73■□□□□ 0.91
USP54Q70EL1 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC20.72■□□□□ 0.91
USP54Q70EL1 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.72■□□□□ 0.91
USP54Q70EL1 LRRC59-203ENST00000576448 1531 ntBASIC20.72■□□□□ 0.91
USP54Q70EL1 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 AC024909.3-201ENST00000611513 2257 ntBASIC20.72■□□□□ 0.91
USP54Q70EL1 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 FAM8A4P-201ENST00000435433 1213 ntBASIC20.72■□□□□ 0.91
USP54Q70EL1 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC20.72■□□□□ 0.91
USP54Q70EL1 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 REEP1-202ENST00000453231 940 ntTSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC20.72■□□□□ 0.91
USP54Q70EL1 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC20.72■□□□□ 0.91
USP54Q70EL1 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
USP54Q70EL1 AL021578.1-201ENST00000613646 709 ntBASIC20.72■□□□□ 0.91
USP54Q70EL1 PPA1-206ENST00000625364 644 ntTSL 5 BASIC20.72■□□□□ 0.91
USP54Q70EL1 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP54Q70EL1 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
USP54Q70EL1 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC20.72■□□□□ 0.91
USP54Q70EL1 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms